Saw a script provided by Modeller that can quickly mutate a point to any other residues.
Here is the linke <Mutate model python script by Modeller>
To use the script, just type command like the following line:
Example: python mutate_model.py 1t29 1699 LEU A > 1t29.log
Where mutate_model.py is the script provided by Modeller
1t29 is the PDB file name
1699 is the position for mutation
LEU is the new residue
A stands for chain number.
I have test this script at Modeller 9v11, it works very well and quickly.
My software notes 
i am having an error on the line
s = selection(mdl1.chains[chain].residues[respos])
can u please help me.
Comment by Omaid Ghayyur — December 3, 2012 @ 9:47 am |
It’s better to ask the Modeller expert to solve your problem. I am not a regular Modeller user, I may not be that helpful.
Comment by kpwu — December 3, 2012 @ 9:54 pm |
can u please tell me if u made any changes in the script before running it on the modeller…
if u did the changes please can u tell me or post the code with the changes, I shall be very thank full to you….
waiting for your reply…..!!!!
Omaid Ghayyur.
Comment by Omaid Ghayyur — December 4, 2012 @ 9:26 am
SVP j’utilise modeller pr la premiere fois et je ne sais pas comment exécuter un fichier PDB sous modeller afin d’inserer une mutation .
Comment by Meriem — April 8, 2014 @ 2:25 pm |