My software notes

November 6, 2012

[Modeller] point mutation script

Filed under: softwares and scripts — kpwu @ 10:41 pm
Tags: , ,

Saw a script provided by Modeller that can quickly mutate a point to any other residues.

Here is the linke <Mutate model python script by Modeller>

To use the script, just type command like the following line:
Example: python mutate_model.py 1t29 1699 LEU A > 1t29.log

Where mutate_model.py is the script provided by Modeller
1t29 is the PDB file name
1699 is the position for mutation
LEU is the new residue
A stands for chain number.

I have test this script at Modeller 9v11, it works very well and quickly.

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4 Comments »

  1. i am having an error on the line
    s = selection(mdl1.chains[chain].residues[respos])
    can u please help me.

    Comment by Omaid Ghayyur — December 3, 2012 @ 9:47 am | Reply

    • It’s better to ask the Modeller expert to solve your problem. I am not a regular Modeller user, I may not be that helpful.

      Comment by kpwu — December 3, 2012 @ 9:54 pm | Reply

      • can u please tell me if u made any changes in the script before running it on the modeller…
        if u did the changes please can u tell me or post the code with the changes, I shall be very thank full to you….
        waiting for your reply…..!!!!
        Omaid Ghayyur.

        Comment by Omaid Ghayyur — December 4, 2012 @ 9:26 am

  2. SVP j’utilise modeller pr la premiere fois et je ne sais pas comment exécuter un fichier PDB sous modeller afin d’inserer une mutation .

    Comment by Meriem — April 8, 2014 @ 2:25 pm | Reply


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