I really hate the inconsistent nomenclature of atoms of amino acids between different programs/database. I finished all NOESY assignment on Sparky using PDB nomenclature and the Sparky XPLOR constraint plugin (shortcut xf) doesn’t take care of the differences between XPLOR and PDB. Thus I have to find a table showing me the differences of names between XPLOR and PDB.
I found BMRB provides such table including few programs (XPLOR, DIANA, PDB, BMRB, SYBYL…) and I have extracted the BMRB/PDB/XPLOR/DIANA columns and reorganized the information. The new table I made is saved as PDF and attached.
Snapshot of part of this table is shown here.
Attached PDF: AA_atoms-nomemclature