My software notes

April 18, 2011

[software] PDB file editor

Filed under: mac,softwares and scripts,web — kpwu @ 9:06 pm
Tags: ,

Bioinformatics.org” hosts a nice GUI-based PDB file editor. The program is written in Java and can run on MS-Win, Linux and Mac OS. Some snapshopts are showing here. I think this is a very friendly program for users who don’t know how to use shell script to change/reset  PDB parameters (e.g. chain ID, beginning number of first residue/atom, remove of heavy atom/water..etc..)

========Program information======

Protein Data Bank (PDB) file editor: web address (http://www.bioinformatics.org/pdbeditor/wiki/Main/HomePage)

=============================

Snapshot 1: target protein coordinate is loaded.

Snapshot 2: the editor window, I reset the beginning residue at 30, and the new ChaiInID is “C”

snapshot 3: the result of new coordinate

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