My software notes

January 26, 2006

NMRView startup file

Filed under: NMRPipe and NMRview — kpwu @ 3:06 am

You could generate a startup file for NMRView,especially when you are going to analyze lots of dynamic data. The startup file can load many spectra in seconds, also including the sequence file, the peak list and PDB coordinate files.

Usage: save the following lines in a file and run “source your_file”

—————- file content ——————————–

##### read in spectra #############
nv_dataset dir /disk1/nv/mouse/gftnmr
nv_dataset open /disk1/nv/mouse/gftnmr/masyn-15c-hsqc-1216.nv
nv_dataset open /disk1/nv/mouse/gftnmr/hacacocanh-dp1.nv
nv_dataset open /disk1/nv/mouse/gftnmr/hacacocanh-dp2.nv
#nv_dataset open /disk1/nv/mouse/gftnmr/hacacocanh-dp3.nv
nv_dataset open /disk1/nv/mouse/gftnmr/hacacocanh-dp4.nv
##### read in molecule sequence file
nv_sread seq /disk1/nv/mouse/gftnmr/mouse.seq
##### read in assignment peaklist ##
readpks /disk1/nv/mouse/gftnmr/masyn-15c-1216-hsqc.xpk
##### read in ppm file
#readppm /disk1/nv/mouse/gftnmr/nv/ppm.out

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