My software notes

January 25, 2006

[MOLMOL]align your structures by a simple macro

Filed under: pymol/ molmol — kpwu @ 3:45 am

Save the following lines into a macro(xxx.mac), you can put the file in the MOLMOL_HOME/macros, then you will find the file in the standard macro directory while you browse the toolbar in MOLMOL

**** ONLY align the backbone, and you will see the RMSD value at the bottom of MOLMOL

——————-copy the following lines into a xxx.mac——————-

SelectAtom ”
SelectBond ”
SelectAngle ”
SelectDist ”
SelectPrim ”
StyleAtom invisible
StyleBond invisible
StyleRibbon invisible as_is as_is as_is
SelectAtom ‘bb’
SelectBond ‘bb’
StyleAtom invisible
StyleBond line
Fit to_first ‘selected’

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